Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g01355.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 883

Length: 1472
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.29


Found at i:1371 original size:17 final size:16

Alignment explanation


    Indices: 1342--1375  Score: 68
    Period size: 16  Copynumber: 2.1  Consensus size: 16

       1332 GGTGAATTTA

                            
       1342 AATACTCAAAAAAACT
          1 AATACTCAAAAAAACT

                            
       1358 AATACTCAAAAAAACT
          1 AATACTCAAAAAAACT

              
       1374 AA
          1 AA

       1376 ATCCAACAAG


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  16   18  1.00

ACGTcount: A:0.65, C:0.18, G:0.00, T:0.18


Consensus pattern (16 bp):   
AATACTCAAAAAAACT
Done.