Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga07g01383.F1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2511
ACGTcount: A:0.26, C:0.16, G:0.23, T:0.35
Found at i:517 original size:137 final size:136
Alignment explanation
Indices: 272--557 Score: 500
Period size: 137 Copynumber: 2.1 Consensus size: 136
262 GAGTAGTCTC
*
272 CCCAAATGGGCTTGCATATGTTATTGATGTTGCATGTATTTTGAAATGAGCCTATGGGCCATACT
1 CCCAAATGGGCTTGCATATGTTACTGATGTTGCATGTATTTTGAAATGAGCCTATGGGCCATACT
*
337 GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTAGCCCAGTACCA
66 GTTATCTGAATAAGGGGCTAAGGCCCAGTTTACTGTAATCTGAAAAGGGCTCTAGCCCAGTACCA
402 CTGTTA
131 CTGTTA
* *
408 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCCTAC
1 CCCAAATGGGCTTGCATATG-TTACTGATGTTGCATGTATTTTGAAATGAGCCTATGGGCCATAC
*
473 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTACTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
65 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTACTGTAATCTGAAAAGGGCTCTAGCCCAGTACC
538 ACTGTTA
130 ACTGTTA
**
545 CCTGAATGGGCTT
1 CCCAAATGGGCTT
558 AGGCCCAATG
Statistics
Matches: 142, Mismatches: 7, Indels: 1
0.95 0.05 0.01
Matches are distributed among these distances:
136 20 0.14
137 122 0.86
ACGTcount: A:0.25, C:0.20, G:0.24, T:0.31
Consensus pattern (136 bp):
CCCAAATGGGCTTGCATATGTTACTGATGTTGCATGTATTTTGAAATGAGCCTATGGGCCATACT
GTTATCTGAATAAGGGGCTAAGGCCCAGTTTACTGTAATCTGAAAAGGGCTCTAGCCCAGTACCA
CTGTTA
Done.