Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g01386.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1884
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29


Found at i:45 original size:6 final size:6

Alignment explanation


    Indices: 34--73  Score: 71
    Period size: 6  Copynumber: 6.5  Consensus size: 6

         24 ATCCTCCTTC

                                                          
         34 CCCTCT CCCTCT CCCTCT CCCTCT CCCTCT CCCTTCT CCC
          1 CCCTCT CCCTCT CCCTCT CCCTCT CCCTCT CCC-TCT CCC

         74 ATTTGTTTTC


Statistics
Matches: 33,  Mismatches: 0, Indels: 1
        0.97            0.00        0.03

Matches are distributed among these distances:
   6   27  0.82
   7    6  0.18

ACGTcount: A:0.00, C:0.68, G:0.00, T:0.33


Consensus pattern (6 bp):   
CCCTCT

Found at i:57 original size:18 final size:19

Alignment explanation


    Indices: 29--73  Score: 76
    Period size: 18  Copynumber: 2.5  Consensus size: 19

         19 CAGCCATCCT

                               
         29 CCTTC-CCCTCTCCCTCTC
          1 CCTTCTCCCTCTCCCTCTC

                               
         47 CC-TCTCCCTCTCCCTCTC
          1 CCTTCTCCCTCTCCCTCTC

                     
         65 CCTTCTCCC
          1 CCTTCTCCC

         74 ATTTGTTTTC


Statistics
Matches: 25,  Mismatches: 0, Indels: 3
        0.89            0.00        0.11

Matches are distributed among these distances:
  17    2  0.08
  18   17  0.68
  19    6  0.24

ACGTcount: A:0.00, C:0.67, G:0.00, T:0.33


Consensus pattern (19 bp):   
CCTTCTCCCTCTCCCTCTC
Done.