Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g01391.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5764
ACGTcount: A:0.32, C:0.16, G:0.19, T:0.34


Found at i:2008 original size:73 final size:73

Alignment explanation


    Indices: 1911--2056  Score: 283
    Period size: 73  Copynumber: 2.0  Consensus size: 73

       1901 CTTTGCCTGC

                        *                                                    
       1911 TTTATTTCATCCTTTTCTTGCTGCCTCCTTTTCACCAATTCCTTCTACGTATTTTTCTTCTTGCT
          1 TTTATTTCATCCGTTTCTTGCTGCCTCCTTTTCACCAATTCCTTCTACGTATTTTTCTTCTTGCT

                    
       1976 GTTCCCCA
         66 GTTCCCCA

                                                                             
       1984 TTTATTTCATCCGTTTCTTGCTGCCTCCTTTTCACCAATTCCTTCTACGTATTTTTCTTCTTGCT
          1 TTTATTTCATCCGTTTCTTGCTGCCTCCTTTTCACCAATTCCTTCTACGTATTTTTCTTCTTGCT

                    
       2049 GTTCCCCA
         66 GTTCCCCA

       2057 GGTCTAAATT


Statistics
Matches: 72,  Mismatches: 1, Indels: 0
        0.99            0.01        0.00

Matches are distributed among these distances:
  73   72  1.00

ACGTcount: A:0.11, C:0.32, G:0.08, T:0.50


Consensus pattern (73 bp):   
TTTATTTCATCCGTTTCTTGCTGCCTCCTTTTCACCAATTCCTTCTACGTATTTTTCTTCTTGCT
GTTCCCCA

Found at i:4636 original size:2 final size:2

Alignment explanation


    Indices: 4629--4657  Score: 58
    Period size: 2  Copynumber: 14.5  Consensus size: 2

       4619 TCAATGGATA

                                                       
       4629 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A

       4658 AGACATGAGA


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   27  1.00

ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48


Consensus pattern (2 bp):   
AT

Found at i:5165 original size:2 final size:2

Alignment explanation


    Indices: 5158--5186  Score: 58
    Period size: 2  Copynumber: 14.5  Consensus size: 2

       5148 TCAATGGATA

                                                       
       5158 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A

       5187 AGTCATGAGA


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   27  1.00

ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48


Consensus pattern (2 bp):   
AT

Done.