Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g01422.M1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3253
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.32


Found at i:1917 original size:35 final size:35

Alignment explanation


    Indices: 1873--1944  Score: 126
    Period size: 35  Copynumber: 2.1  Consensus size: 35

       1863 GTTTTAGACA

                                         *     
       1873 TTACAAATTGGTAAGTCAAAATTTGAACTGTTTTT
          1 TTACAAATTGGTAAGTCAAAATTTGAACTATTTTT

                *                              
       1908 TTACGAATTGGTAAGTCAAAATTTGAACTATTTTT
          1 TTACAAATTGGTAAGTCAAAATTTGAACTATTTTT

              
       1943 TT
          1 TT

       1945 CTCTGATTTC


Statistics
Matches: 35,  Mismatches: 2, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  35   35  1.00

ACGTcount: A:0.33, C:0.08, G:0.14, T:0.44


Consensus pattern (35 bp):   
TTACAAATTGGTAAGTCAAAATTTGAACTATTTTT
Done.