Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g01424.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 367

Length: 613
ACGTcount: A:0.32, C:0.19, G:0.18, T:0.30


Found at i:423 original size:18 final size:18

Alignment explanation


    Indices: 400--434  Score: 52
    Period size: 18  Copynumber: 1.9  Consensus size: 18

        390 TTCATTGCTT

                      *       
        400 TTCAAAAACATTTCTGGC
          1 TTCAAAAACACTTCTGGC

                   *         
        418 TTCAAAAGCACTTCTGG
          1 TTCAAAAACACTTCTGG

        435 AAGAAAAGCT


Statistics
Matches: 15,  Mismatches: 2, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  18   15  1.00

ACGTcount: A:0.31, C:0.23, G:0.14, T:0.31


Consensus pattern (18 bp):   
TTCAAAAACACTTCTGGC
Done.