Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g01428.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5087
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.31


Found at i:576 original size:23 final size:22

Alignment explanation


    Indices: 550--592  Score: 52
    Period size: 23  Copynumber: 1.9  Consensus size: 22

        540 CTATATTCGG

                                    
        550 ATTAGTTG-CCTTGTTATTTTGAA
          1 ATTA-TTGTCCTTGTT-TTTTGAA

                     *          
        573 ATTATTGTCTTTGTTTTTTG
          1 ATTATTGTCCTTGTTTTTTG

        593 TTGCGTTGTG


Statistics
Matches: 18,  Mismatches: 1, Indels: 3
        0.82            0.05        0.14

Matches are distributed among these distances:
  22    8  0.44
  23   10  0.56

ACGTcount: A:0.16, C:0.07, G:0.16, T:0.60


Consensus pattern (22 bp):   
ATTATTGTCCTTGTTTTTTGAA
Done.