Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g01639.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2280
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.29


Found at i:698 original size:18 final size:18

Alignment explanation


    Indices: 675--710  Score: 63
    Period size: 18  Copynumber: 2.0  Consensus size: 18

        665 TTTTCATACT

                              
        675 CTTCATCATCTTCTTCTC
          1 CTTCATCATCTTCTTCTC

                   *          
        693 CTTCATCTTCTTCTTCTC
          1 CTTCATCATCTTCTTCTC

        711 AGCATAAAAC


Statistics
Matches: 17,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  18   17  1.00

ACGTcount: A:0.08, C:0.39, G:0.00, T:0.53


Consensus pattern (18 bp):   
CTTCATCATCTTCTTCTC
Done.