Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g01460.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 826

Length: 1377
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.30


Found at i:934 original size:15 final size:15

Alignment explanation


    Indices: 914--951  Score: 76
    Period size: 15  Copynumber: 2.5  Consensus size: 15

        904 AACCACTACT

                           
        914 TCCACCTGGGCAGTA
          1 TCCACCTGGGCAGTA

                           
        929 TCCACCTGGGCAGTA
          1 TCCACCTGGGCAGTA

                    
        944 TCCACCTG
          1 TCCACCTG

        952 CACAACAGCA


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   23  1.00

ACGTcount: A:0.18, C:0.37, G:0.24, T:0.21


Consensus pattern (15 bp):   
TCCACCTGGGCAGTA
Done.