Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g01639.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3756
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.32


Found at i:698 original size:18 final size:18

Alignment explanation


    Indices: 675--710  Score: 63
    Period size: 18  Copynumber: 2.0  Consensus size: 18

        665 TTTTCATACT

                              
        675 CTTCATCATCTTCTTCTC
          1 CTTCATCATCTTCTTCTC

                   *          
        693 CTTCATCTTCTTCTTCTC
          1 CTTCATCATCTTCTTCTC

        711 AGCATAAAAC


Statistics
Matches: 17,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  18   17  1.00

ACGTcount: A:0.08, C:0.39, G:0.00, T:0.53


Consensus pattern (18 bp):   
CTTCATCATCTTCTTCTC

Found at i:2338 original size:2 final size:2

Alignment explanation


    Indices: 2331--2366  Score: 72
    Period size: 2  Copynumber: 18.0  Consensus size: 2

       2321 TCTTTAATTT

                                                                 
       2331 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
          1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC

       2367 CACTGTGGTT


Statistics
Matches: 34,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   34  1.00

ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50


Consensus pattern (2 bp):   
TC

Found at i:3521 original size:2 final size:2

Alignment explanation


    Indices: 3514--3542  Score: 58
    Period size: 2  Copynumber: 14.5  Consensus size: 2

       3504 TTTGTGGAGT

                                                       
       3514 GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
          1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA G

       3543 CAAGAAAACA


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   27  1.00

ACGTcount: A:0.48, C:0.00, G:0.52, T:0.00


Consensus pattern (2 bp):   
GA

Done.