Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g01466.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3064
ACGTcount: A:0.29, C:0.18, G:0.21, T:0.32


Found at i:2377 original size:16 final size:16

Alignment explanation


    Indices: 2340--2370  Score: 53
    Period size: 16  Copynumber: 1.9  Consensus size: 16

       2330 TATTAAAACT

                            
       2340 ACTAATCAAATAATAA
          1 ACTAATCAAATAATAA

                   *       
       2356 ACTAATCTAATAATA
          1 ACTAATCAAATAATA

       2371 TAATAATATT


Statistics
Matches: 14,  Mismatches: 1, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  16   14  1.00

ACGTcount: A:0.58, C:0.13, G:0.00, T:0.29


Consensus pattern (16 bp):   
ACTAATCAAATAATAA
Done.