Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g01473.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1913
ACGTcount: A:0.29, C:0.19, G:0.22, T:0.30


Found at i:197 original size:21 final size:24

Alignment explanation


    Indices: 144--190  Score: 85
    Period size: 24  Copynumber: 2.0  Consensus size: 24

        134 TTTGGTTCAT

                                    
        144 AATCAGCAGCACTTTCAACAACAC
          1 AATCAGCAGCACTTTCAACAACAC

                       *           
        168 AATCAGCAGCATTTTCAACAACA
          1 AATCAGCAGCACTTTCAACAACA

        191 ACAGCAGTGG


Statistics
Matches: 22,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  24   22  1.00

ACGTcount: A:0.43, C:0.30, G:0.09, T:0.19


Consensus pattern (24 bp):   
AATCAGCAGCACTTTCAACAACAC
Done.