Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g01477.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1995
ACGTcount: A:0.31, C:0.14, G:0.22, T:0.33


Found at i:118 original size:47 final size:47

Alignment explanation


    Indices: 62--240  Score: 217
    Period size: 47  Copynumber: 3.8  Consensus size: 47

         52 AATGGTTGAG

                                                            
         62 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGGAAT
          1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGT-GAAT

                                            * *             
        110 C-TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGT-AACT
          1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAA-T

                                                         *    
        153 AGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-
          1 ---CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAAT

             **    *                               
        202 CGCCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
          1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG

        241 GCGGGTTACA


Statistics
Matches: 114,  Mismatches: 8, Indels: 20
        0.80            0.06        0.14

Matches are distributed among these distances:
  42    2  0.02
  43    1  0.01
  44    5  0.04
  46   39  0.34
  47   58  0.51
  48    3  0.03
  50    4  0.04
  51    2  0.02

ACGTcount: A:0.21, C:0.21, G:0.28, T:0.29


Consensus pattern (47 bp):   
CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAAT
Done.