Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g01495.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3207
ACGTcount: A:0.30, C:0.15, G:0.21, T:0.34


Found at i:888 original size:43 final size:43

Alignment explanation


    Indices: 823--908  Score: 106
    Period size: 43  Copynumber: 2.0  Consensus size: 43

        813 AGTTGTCTGG

                    *        *                           
        823 AATTGTTATTGAAATTTTAATTTGCTTG-G-AATTTTTATGTTTA
          1 AATTGTTAGTGAAATTTAAATTT--TTGTGAAATTTTTATGTTTA

                                                        
        866 AATTGTTAGT-AATATTTAAATTTTTGTGAAATTTTTATGTTTA
          1 AATTGTTAGTGAA-ATTTAAATTTTTGTGAAATTTTTATGTTTA

        909 GTTTGTTTGA


Statistics
Matches: 38,  Mismatches: 2, Indels: 6
        0.83            0.04        0.13

Matches are distributed among these distances:
  41    3  0.08
  42    3  0.08
  43   32  0.84

ACGTcount: A:0.30, C:0.01, G:0.13, T:0.56


Consensus pattern (43 bp):   
AATTGTTAGTGAAATTTAAATTTTTGTGAAATTTTTATGTTTA
Done.