Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g01525.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4678
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29


Found at i:3376 original size:42 final size:42

Alignment explanation


    Indices: 3317--3399  Score: 112
    Period size: 42  Copynumber: 2.0  Consensus size: 42

       3307 AGTCAACCTA

                  *                *                  
       3317 CAATGGTCATGCAATCACTAATATCTTCTCCATCAATGGAAT
          1 CAATGGCCATGCAATCACTAATACCTTCTCCATCAATGGAAT

                        *      *  *      *           
       3359 CAATGGCCATGCCATCACTGATGCCTTCTGCATCAATGGAA
          1 CAATGGCCATGCAATCACTAATACCTTCTCCATCAATGGAA

       3400 CCCATTAGTC


Statistics
Matches: 35,  Mismatches: 6, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  42   35  1.00

ACGTcount: A:0.30, C:0.27, G:0.16, T:0.28


Consensus pattern (42 bp):   
CAATGGCCATGCAATCACTAATACCTTCTCCATCAATGGAAT
Done.