Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g01648.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5171
ACGTcount: A:0.30, C:0.20, G:0.19, T:0.32


Found at i:1624 original size:15 final size:15

Alignment explanation


    Indices: 1604--1634  Score: 62
    Period size: 15  Copynumber: 2.1  Consensus size: 15

       1594 CAACTGTTAG

                           
       1604 TACTATCCCCTCGGT
          1 TACTATCCCCTCGGT

                           
       1619 TACTATCCCCTCGGT
          1 TACTATCCCCTCGGT

             
       1634 T
          1 T

       1635 CCACCTCCGC


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   16  1.00

ACGTcount: A:0.13, C:0.39, G:0.13, T:0.35


Consensus pattern (15 bp):   
TACTATCCCCTCGGT

Found at i:4002 original size:46 final size:46

Alignment explanation


    Indices: 3938--4028  Score: 155
    Period size: 46  Copynumber: 2.0  Consensus size: 46

       3928 AACCTAGGCC

                      *                                   
       3938 CTCATGCATATAACATAATGCTCTTGCCATTGGGCGAAGAGGTTAT
          1 CTCATGCATACAACATAATGCTCTTGCCATTGGGCGAAGAGGTTAT

                   *     *                               
       3984 CTCATGCCTACAATATAATGCTCTTGCCATTGGGCGAAGAGGTTA
          1 CTCATGCATACAACATAATGCTCTTGCCATTGGGCGAAGAGGTTA

       4029 ACTTAATTTA


Statistics
Matches: 42,  Mismatches: 3, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  46   42  1.00

ACGTcount: A:0.27, C:0.21, G:0.22, T:0.30


Consensus pattern (46 bp):   
CTCATGCATACAACATAATGCTCTTGCCATTGGGCGAAGAGGTTAT
Done.