Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g01549.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2967
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.31


Found at i:2596 original size:23 final size:21

Alignment explanation


    Indices: 2565--2606  Score: 59
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       2555 AACTGACAAA

                *          *     
       2565 TATTGTTA-TATTTTCTTTTT
          1 TATTATTATTATTTTTTTTTT

                                 
       2585 TATTATTATTATTTTTTTTTT
          1 TATTATTATTATTTTTTTTTT

             
       2606 T
          1 T

       2607 GGTCCCTCTA


Statistics
Matches: 19,  Mismatches: 2, Indels: 1
        0.86            0.09        0.05

Matches are distributed among these distances:
  20    7  0.37
  21   12  0.63

ACGTcount: A:0.17, C:0.02, G:0.02, T:0.79


Consensus pattern (21 bp):   
TATTATTATTATTTTTTTTTT
Done.