Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g01557.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2369
ACGTcount: A:0.27, C:0.18, G:0.21, T:0.34


Found at i:746 original size:30 final size:30

Alignment explanation


    Indices: 712--771  Score: 120
    Period size: 30  Copynumber: 2.0  Consensus size: 30

        702 AAGCTCTTTG

                                          
        712 GGGGTATTGGGTATTGTTAAAGAAAATTGT
          1 GGGGTATTGGGTATTGTTAAAGAAAATTGT

                                          
        742 GGGGTATTGGGTATTGTTAAAGAAAATTGT
          1 GGGGTATTGGGTATTGTTAAAGAAAATTGT

        772 TCTCTTTTGT


Statistics
Matches: 30,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  30   30  1.00

ACGTcount: A:0.30, C:0.00, G:0.33, T:0.37


Consensus pattern (30 bp):   
GGGGTATTGGGTATTGTTAAAGAAAATTGT
Done.