Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g01649.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 668

Length: 1114
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.31


Found at i:40 original size:26 final size:26

Alignment explanation


    Indices: 1--70  Score: 113
    Period size: 26  Copynumber: 2.7  Consensus size: 26

                  *  *                
          1 GTAAATATTCCATGATAATGGGTTAG
          1 GTAAATGTTTCATGATAATGGGTTAG

                                 *    
         27 GTAAATGTTTCATGATAATGGTTTAG
          1 GTAAATGTTTCATGATAATGGGTTAG

                              
         53 GTAAATGTTTCATGATAA
          1 GTAAATGTTTCATGATAA

         71 GAAATTCATG


Statistics
Matches: 41,  Mismatches: 3, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  26   41  1.00

ACGTcount: A:0.34, C:0.06, G:0.21, T:0.39


Consensus pattern (26 bp):   
GTAAATGTTTCATGATAATGGGTTAG
Done.