Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g01572.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 885

Length: 1475
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.27


Found at i:46 original size:21 final size:21

Alignment explanation


    Indices: 22--68  Score: 51
    Period size: 21  Copynumber: 2.2  Consensus size: 21

         12 TGAAGAAAGC

                                  
         22 AAAGGAAGATT-ACAAAGAAAT
          1 AAAGGAA-ATTCACAAAGAAAT

                *  *   *         
         43 AAAGCAACTTCCCAAAGAAAT
          1 AAAGGAAATTCACAAAGAAAT

                 
         64 AAAGG
          1 AAAGG

         69 TAAGCGTTCG


Statistics
Matches: 21,  Mismatches: 4, Indels: 2
        0.78            0.15        0.07

Matches are distributed among these distances:
  20    2  0.10
  21   19  0.90

ACGTcount: A:0.57, C:0.13, G:0.17, T:0.13


Consensus pattern (21 bp):   
AAAGGAAATTCACAAAGAAAT
Done.