Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g01650.P2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2419
ACGTcount: A:0.28, C:0.14, G:0.18, T:0.39


Found at i:557 original size:21 final size:21

Alignment explanation


    Indices: 531--572  Score: 84
    Period size: 21  Copynumber: 2.0  Consensus size: 21

        521 ATAATGAGTA

                                 
        531 AATTTTTATTTTCCATTACTT
          1 AATTTTTATTTTCCATTACTT

                                 
        552 AATTTTTATTTTCCATTACTT
          1 AATTTTTATTTTCCATTACTT

        573 CTGTATATAT


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   21  1.00

ACGTcount: A:0.24, C:0.14, G:0.00, T:0.62


Consensus pattern (21 bp):   
AATTTTTATTTTCCATTACTT
Done.