Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g01651.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 750

Length: 1250
ACGTcount: A:0.33, C:0.12, G:0.19, T:0.36


Found at i:1007 original size:46 final size:45

Alignment explanation


    Indices: 919--1037  Score: 148
    Period size: 46  Copynumber: 2.6  Consensus size: 45

        909 TAGGCTATTT

                    *        *             *             
        919 TTTGTGTAAGTTCAACCCTAACGGTGAATAGGCACTATTATCCGA
          1 TTTGTGTAGGTTCAACCTTAACGGTGAATAGACACTATTATCCGA

                            *     *              *        
        964 TTTGTGTAGGTTCAACTTTAATGGGTGAATAGACACTGTTATCCGA
          1 TTTGTGTAGGTTCAACCTTAA-CGGTGAATAGACACTATTATCCGA

              **                        
       1010 TTCATGTAGGTTCAACCTTAACGAGTGA
          1 TTTGTGTAGGTTCAACCTTAACG-GTGA

       1038 CCAGACAATA


Statistics
Matches: 62,  Mismatches: 10, Indels: 3
        0.83            0.13        0.04

Matches are distributed among these distances:
  45   19  0.31
  46   43  0.69

ACGTcount: A:0.28, C:0.17, G:0.22, T:0.34


Consensus pattern (45 bp):   
TTTGTGTAGGTTCAACCTTAACGGTGAATAGACACTATTATCCGA

Done.