Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g01574.F30

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3269
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.30


Found at i:2664 original size:6 final size:6

Alignment explanation


    Indices: 2653--2680  Score: 56
    Period size: 6  Copynumber: 4.7  Consensus size: 6

       2643 CCCCCTACTA

                                            
       2653 CACAGG CACAGG CACAGG CACAGG CACA
          1 CACAGG CACAGG CACAGG CACAGG CACA

       2681 ACCATGGACT


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   22  1.00

ACGTcount: A:0.36, C:0.36, G:0.29, T:0.00


Consensus pattern (6 bp):   
CACAGG

Done.