Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g01577.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 737

Length: 1229
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.29


Found at i:258 original size:12 final size:12

Alignment explanation


    Indices: 237--291  Score: 56
    Period size: 12  Copynumber: 4.6  Consensus size: 12

        227 GCCATTTCTG

                 *     *
        237 CTTCTCCATCAC
          1 CTTCTTCATCAT

                        
        249 CTTCTTCATCAT
          1 CTTCTTCATCAT

             *  *       
        261 CATCATCATCAT
          1 CTTCTTCATCAT

                   *  * 
        273 CTTCTTCTTCTT
          1 CTTCTTCATCAT

                   
        285 CTTCTTC
          1 CTTCTTC

        292 TTCTTCTTTA


Statistics
Matches: 35,  Mismatches: 8, Indels: 0
        0.81            0.19        0.00

Matches are distributed among these distances:
  12   35  1.00

ACGTcount: A:0.15, C:0.38, G:0.00, T:0.47


Consensus pattern (12 bp):   
CTTCTTCATCAT

Found at i:278 original size:3 final size:3

Alignment explanation


    Indices: 272--299  Score: 56
    Period size: 3  Copynumber: 9.3  Consensus size: 3

        262 ATCATCATCA

                                                 
        272 TCT TCT TCT TCT TCT TCT TCT TCT TCT T
          1 TCT TCT TCT TCT TCT TCT TCT TCT TCT T

        300 TAAGTAGGGC


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   25  1.00

ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68


Consensus pattern (3 bp):   
TCT

Done.