Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g01581.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3882
ACGTcount: A:0.29, C:0.15, G:0.21, T:0.34


Found at i:3105 original size:57 final size:57

Alignment explanation


    Indices: 3037--3150  Score: 212
    Period size: 57  Copynumber: 2.0  Consensus size: 57

       3027 AGTTTCATTC

                                                                      
       3037 ATCTCTATTATTAAAAGAAC-TGATATAGCTAATAGATCAATTAAACAGTAAAATTTT
          1 ATCTCTATTATTAAAAGAACAT-ATATAGCTAATAGATCAATTAAACAGTAAAATTTT

                                                                     
       3094 ATCTCTATTATTAAAAGAACATATATAGCTAATAGATCAATTAAACAGTAAAATTTT
          1 ATCTCTATTATTAAAAGAACATATATAGCTAATAGATCAATTAAACAGTAAAATTTT

       3151 TAGTAATAAA


Statistics
Matches: 56,  Mismatches: 0, Indels: 2
        0.97            0.00        0.03

Matches are distributed among these distances:
  57   55  0.98
  58    1  0.02

ACGTcount: A:0.46, C:0.11, G:0.08, T:0.35


Consensus pattern (57 bp):   
ATCTCTATTATTAAAAGAACATATATAGCTAATAGATCAATTAAACAGTAAAATTTT
Done.