Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g01583.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2026
ACGTcount: A:0.28, C:0.18, G:0.20, T:0.34


Found at i:592 original size:13 final size:14

Alignment explanation


    Indices: 567--599  Score: 59
    Period size: 13  Copynumber: 2.4  Consensus size: 14

        557 TATATACATA

                          
        567 TATGTACATGTATG
          1 TATGTACATGTATG

                          
        581 TATGTA-ATGTATG
          1 TATGTACATGTATG

                  
        594 TATGTA
          1 TATGTA

        600 GGTATACTGC


Statistics
Matches: 19,  Mismatches: 0, Indels: 1
        0.95            0.00        0.05

Matches are distributed among these distances:
  13   13  0.68
  14    6  0.32

ACGTcount: A:0.30, C:0.03, G:0.21, T:0.45


Consensus pattern (14 bp):   
TATGTACATGTATG
Done.