Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g01593.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 619

Length: 1033
ACGTcount: A:0.29, C:0.25, G:0.14, T:0.32


Found at i:475 original size:38 final size:38

Alignment explanation


    Indices: 424--500  Score: 154
    Period size: 38  Copynumber: 2.0  Consensus size: 38

        414 TATACCTCTC

                                                  
        424 ATTGTCTCTAAAAATTATTCCAGTCACTGAACTAAGCA
          1 ATTGTCTCTAAAAATTATTCCAGTCACTGAACTAAGCA

                                                  
        462 ATTGTCTCTAAAAATTATTCCAGTCACTGAACTAAGCA
          1 ATTGTCTCTAAAAATTATTCCAGTCACTGAACTAAGCA

             
        500 A
          1 A

        501 ACACATGTTA


Statistics
Matches: 39,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  38   39  1.00

ACGTcount: A:0.38, C:0.21, G:0.10, T:0.31


Consensus pattern (38 bp):   
ATTGTCTCTAAAAATTATTCCAGTCACTGAACTAAGCA
Done.