Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g01596.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2042
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.31


Found at i:1947 original size:14 final size:14

Alignment explanation


    Indices: 1925--1954  Score: 51
    Period size: 14  Copynumber: 2.1  Consensus size: 14

       1915 GTCCAGTTAC

                          
       1925 CATTCAGTGCATAT
          1 CATTCAGTGCATAT

                *         
       1939 CATTTAGTGCATAT
          1 CATTCAGTGCATAT

              
       1953 CA
          1 CA

       1955 GTTTCAGCCA


Statistics
Matches: 15,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  14   15  1.00

ACGTcount: A:0.30, C:0.20, G:0.13, T:0.37


Consensus pattern (14 bp):   
CATTCAGTGCATAT
Done.