Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g01599.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 343

Length: 572
ACGTcount: A:0.23, C:0.15, G:0.25, T:0.36


Found at i:405 original size:44 final size:43

Alignment explanation


    Indices: 324--408  Score: 143
    Period size: 44  Copynumber: 2.0  Consensus size: 43

        314 GTCCACTTTC

                            *                          
        324 CTTGAACTTTGCTGGATGGTTAAAATTTTAAAGCAACTAGTTT
          1 CTTGAACTTTGCTGGAGGGTTAAAATTTTAAAGCAACTAGTTT

                                  *                   
        367 CTTGAACTTTGCTGGAGGGGTTTAAATTTTAAAGCAACTAGT
          1 CTTGAACTTTGCTGGA-GGGTTAAAATTTTAAAGCAACTAGT

        409 CTAACTTACG


Statistics
Matches: 39,  Mismatches: 2, Indels: 1
        0.93            0.05        0.02

Matches are distributed among these distances:
  43   16  0.41
  44   23  0.59

ACGTcount: A:0.29, C:0.12, G:0.21, T:0.38


Consensus pattern (43 bp):   
CTTGAACTTTGCTGGAGGGTTAAAATTTTAAAGCAACTAGTTT
Done.