Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g01603.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3302
ACGTcount: A:0.30, C:0.22, G:0.21, T:0.27


Found at i:568 original size:6 final size:6

Alignment explanation


    Indices: 557--583  Score: 54
    Period size: 6  Copynumber: 4.5  Consensus size: 6

        547 TTTTTCTCTC

                                           
        557 TCTATA TCTATA TCTATA TCTATA TCT
          1 TCTATA TCTATA TCTATA TCTATA TCT

        584 GTCTCAAAAG


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   21  1.00

ACGTcount: A:0.30, C:0.19, G:0.00, T:0.52


Consensus pattern (6 bp):   
TCTATA

Found at i:2941 original size:5 final size:5

Alignment explanation


    Indices: 2933--2961  Score: 58
    Period size: 5  Copynumber: 5.8  Consensus size: 5

       2923 AATAGAGAAG

                                              
       2933 AAAAC AAAAC AAAAC AAAAC AAAAC AAAA
          1 AAAAC AAAAC AAAAC AAAAC AAAAC AAAA

       2962 AAAGGGTGCA


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   5   24  1.00

ACGTcount: A:0.83, C:0.17, G:0.00, T:0.00


Consensus pattern (5 bp):   
AAAAC

Done.