Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g01603.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2627
ACGTcount: A:0.30, C:0.23, G:0.22, T:0.25


Found at i:2266 original size:5 final size:5

Alignment explanation


    Indices: 2258--2286  Score: 58
    Period size: 5  Copynumber: 5.8  Consensus size: 5

       2248 AATAGAGAAG

                                              
       2258 AAAAC AAAAC AAAAC AAAAC AAAAC AAAA
          1 AAAAC AAAAC AAAAC AAAAC AAAAC AAAA

       2287 AAAGGGTGCA


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   5   24  1.00

ACGTcount: A:0.83, C:0.17, G:0.00, T:0.00


Consensus pattern (5 bp):   
AAAAC

Done.