Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g01634.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2215
ACGTcount: A:0.27, C:0.20, G:0.21, T:0.32


Found at i:66 original size:25 final size:25

Alignment explanation


    Indices: 32--108  Score: 102
    Period size: 25  Copynumber: 3.1  Consensus size: 25

         22 TCTCCCTCCC

                                      
         32 TTCCTTCCAATTCTTAATT-TTCTTT
          1 TTCCTTCCAATTCTT-ATTCTTCTTT

                           *     *   
         57 TTCCTTCCAATTCTTCTTCTTTTTT
          1 TTCCTTCCAATTCTTATTCTTCTTT

                           *     *   
         82 TTCCTTCCAATTCTTCTTCTTTTTT
          1 TTCCTTCCAATTCTTATTCTTCTTT

              
        107 TT
          1 TT

        109 TTCTTTTGGG


Statistics
Matches: 49,  Mismatches: 2, Indels: 2
        0.92            0.04        0.04

Matches are distributed among these distances:
  24    2  0.04
  25   47  0.96

ACGTcount: A:0.10, C:0.26, G:0.00, T:0.64


Consensus pattern (25 bp):   
TTCCTTCCAATTCTTATTCTTCTTT
Done.