Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g01637.N2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 887

Length: 1479
ACGTcount: A:0.27, C:0.17, G:0.19, T:0.37


Found at i:359 original size:25 final size:25

Alignment explanation


    Indices: 331--382  Score: 104
    Period size: 25  Copynumber: 2.1  Consensus size: 25

        321 GCCATAACAG

                                     
        331 TTTGCTACTTTCATTTTCTGTCTAT
          1 TTTGCTACTTTCATTTTCTGTCTAT

                                     
        356 TTTGCTACTTTCATTTTCTGTCTAT
          1 TTTGCTACTTTCATTTTCTGTCTAT

              
        381 TT
          1 TT

        383 ATCTGTGTAT


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  25   27  1.00

ACGTcount: A:0.12, C:0.19, G:0.08, T:0.62


Consensus pattern (25 bp):   
TTTGCTACTTTCATTTTCTGTCTAT

Found at i:1381 original size:13 final size:13

Alignment explanation


    Indices: 1363--1387  Score: 50
    Period size: 13  Copynumber: 1.9  Consensus size: 13

       1353 ATCCACTTCT

                         
       1363 GGTCTGTCAACTA
          1 GGTCTGTCAACTA

                        
       1376 GGTCTGTCAACT
          1 GGTCTGTCAACT

       1388 TCAAGTTTGT


Statistics
Matches: 12,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   12  1.00

ACGTcount: A:0.20, C:0.24, G:0.24, T:0.32


Consensus pattern (13 bp):   
GGTCTGTCAACTA
Done.