Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g01640.C1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2177
ACGTcount: A:0.30, C:0.20, G:0.19, T:0.31


Found at i:244 original size:10 final size:10

Alignment explanation


    Indices: 229--255  Score: 54
    Period size: 10  Copynumber: 2.7  Consensus size: 10

        219 TCCTCTCCTC

                      
        229 TCCCTCCAAA
          1 TCCCTCCAAA

                      
        239 TCCCTCCAAA
          1 TCCCTCCAAA

                   
        249 TCCCTCC
          1 TCCCTCC

        256 CCTTTCCTCT


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  10   17  1.00

ACGTcount: A:0.22, C:0.56, G:0.00, T:0.22


Consensus pattern (10 bp):   
TCCCTCCAAA
Done.