Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g01642.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1675
ACGTcount: A:0.31, C:0.14, G:0.19, T:0.36


Found at i:384 original size:19 final size:20

Alignment explanation


    Indices: 360--404  Score: 65
    Period size: 19  Copynumber: 2.3  Consensus size: 20

        350 TTGAGATGGA

                                
        360 ATGATATTCAACTTTGTGG-
          1 ATGATATTCAACTTTGTGGT

                    *      *    
        379 ATGATATTTAACTTTTTGGT
          1 ATGATATTCAACTTTGTGGT

                  
        399 ATGATA
          1 ATGATA

        405 GGGACATTAA


Statistics
Matches: 23,  Mismatches: 2, Indels: 1
        0.88            0.08        0.04

Matches are distributed among these distances:
  19   17  0.74
  20    6  0.26

ACGTcount: A:0.29, C:0.07, G:0.18, T:0.47


Consensus pattern (20 bp):   
ATGATATTCAACTTTGTGGT

Done.