Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g01645.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2594
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.33


Found at i:74 original size:6 final size:6

Alignment explanation


    Indices: 62--110  Score: 62
    Period size: 6  Copynumber: 8.2  Consensus size: 6

         52 ACCCATACGA

                   *      *    * *                                 
         62 TCCCTT CCCCTT CCCCTA CCCCTT TCCCTT TCCCTT TCCCTT TCCCTT
          1 TCCCTT TCCCTT TCCCTT TCCCTT TCCCTT TCCCTT TCCCTT TCCCTT

             
        110 T
          1 T

        111 GGTTTTGAAA


Statistics
Matches: 39,  Mismatches: 4, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
   6   39  1.00

ACGTcount: A:0.02, C:0.55, G:0.00, T:0.43


Consensus pattern (6 bp):   
TCCCTT

Done.