Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g01653.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 489

Length: 815
ACGTcount: A:0.35, C:0.12, G:0.16, T:0.37


Found at i:458 original size:9 final size:9

Alignment explanation


    Indices: 444--468  Score: 50
    Period size: 9  Copynumber: 2.8  Consensus size: 9

        434 TGCATAAATA

                     
        444 TAATATAGT
          1 TAATATAGT

                     
        453 TAATATAGT
          1 TAATATAGT

                   
        462 TAATATA
          1 TAATATA

        469 TAATATAATA


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   16  1.00

ACGTcount: A:0.48, C:0.00, G:0.08, T:0.44


Consensus pattern (9 bp):   
TAATATAGT
Done.