Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g01681.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1843
ACGTcount: A:0.29, C:0.16, G:0.22, T:0.32


Found at i:446 original size:40 final size:40

Alignment explanation


    Indices: 391--472  Score: 155
    Period size: 40  Copynumber: 2.0  Consensus size: 40

        381 ACCACGAATG

                                                *   
        391 TTGAGATTACTGGAGTTTCATATTTTTCGATTATGATTAT
          1 TTGAGATTACTGGAGTTTCATATTTTTCGATTATGACTAT

                                                    
        431 TTGAGATTACTGGAGTTTCATATTTTTCGATTATGACTAT
          1 TTGAGATTACTGGAGTTTCATATTTTTCGATTATGACTAT

              
        471 TT
          1 TT

        473 ACTATGAATT


Statistics
Matches: 41,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  40   41  1.00

ACGTcount: A:0.24, C:0.09, G:0.17, T:0.50


Consensus pattern (40 bp):   
TTGAGATTACTGGAGTTTCATATTTTTCGATTATGACTAT

Found at i:1679 original size:21 final size:22

Alignment explanation


    Indices: 1640--1680  Score: 57
    Period size: 21  Copynumber: 1.9  Consensus size: 22

       1630 TCGGCCTCGC

                         *        
       1640 ATGGTCTCGTTTCGAGTCATGG
          1 ATGGTCTCGTTTCCAGTCATGG

                          *     
       1662 ATGG-CTCGTTTCCTGTCAT
          1 ATGGTCTCGTTTCCAGTCAT

       1681 AATCATGGTA


Statistics
Matches: 17,  Mismatches: 2, Indels: 1
        0.85            0.10        0.05

Matches are distributed among these distances:
  21   13  0.76
  22    4  0.24

ACGTcount: A:0.12, C:0.22, G:0.27, T:0.39


Consensus pattern (22 bp):   
ATGGTCTCGTTTCCAGTCATGG
Done.