Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g01681.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 727

Length: 1213
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.31


Found at i:1049 original size:21 final size:22

Alignment explanation


    Indices: 1010--1050  Score: 57
    Period size: 21  Copynumber: 1.9  Consensus size: 22

       1000 TCGGCCTCGC

                         *        
       1010 ATGGTCTCGTTTCGAGTCATGG
          1 ATGGTCTCGTTTCCAGTCATGG

                          *     
       1032 ATGG-CTCGTTTCCTGTCAT
          1 ATGGTCTCGTTTCCAGTCAT

       1051 AATCATGGTA


Statistics
Matches: 17,  Mismatches: 2, Indels: 1
        0.85            0.10        0.05

Matches are distributed among these distances:
  21   13  0.76
  22    4  0.24

ACGTcount: A:0.12, C:0.22, G:0.27, T:0.39


Consensus pattern (22 bp):   
ATGGTCTCGTTTCCAGTCATGG
Done.