Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g01726.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 942

Length: 1571
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28


Found at i:1482 original size:41 final size:41

Alignment explanation


    Indices: 1425--1504  Score: 160
    Period size: 41  Copynumber: 2.0  Consensus size: 41

       1415 TTTGTTAGAA

                                                     
       1425 TGAACTGCAGTTTACTATTTTGTATTTTGGGTAGTCTTTAT
          1 TGAACTGCAGTTTACTATTTTGTATTTTGGGTAGTCTTTAT

                                                   
       1466 TGAACTGCAGTTTACTATTTTGTATTTTGGGTAGTCTTT
          1 TGAACTGCAGTTTACTATTTTGTATTTTGGGTAGTCTTT

       1505 GTGGCCGAAG


Statistics
Matches: 39,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  41   39  1.00

ACGTcount: A:0.19, C:0.10, G:0.20, T:0.51


Consensus pattern (41 bp):   
TGAACTGCAGTTTACTATTTTGTATTTTGGGTAGTCTTTAT
Done.