Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g01728.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8200
ACGTcount: A:0.32, C:0.20, G:0.15, T:0.34


Found at i:3261 original size:33 final size:33

Alignment explanation


    Indices: 3219--3289  Score: 142
    Period size: 33  Copynumber: 2.2  Consensus size: 33

       3209 TTTCTTCTTG

                                             
       3219 AAAACTCGCGTAAGGTGCACCATAGAAACCTGT
          1 AAAACTCGCGTAAGGTGCACCATAGAAACCTGT

                                             
       3252 AAAACTCGCGTAAGGTGCACCATAGAAACCTGT
          1 AAAACTCGCGTAAGGTGCACCATAGAAACCTGT

                 
       3285 AAAAC
          1 AAAAC

       3290 GTTAAAGCTT


Statistics
Matches: 38,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  33   38  1.00

ACGTcount: A:0.39, C:0.24, G:0.20, T:0.17


Consensus pattern (33 bp):   
AAAACTCGCGTAAGGTGCACCATAGAAACCTGT

Found at i:6858 original size:20 final size:20

Alignment explanation


    Indices: 6830--6881  Score: 86
    Period size: 20  Copynumber: 2.6  Consensus size: 20

       6820 AAAAGGCCCT

                                
       6830 TTGACCGTTAATTTTAATGG
          1 TTGACCGTTAATTTTAATGG

                *               
       6850 TTGATCGTTAATTTTAATGG
          1 TTGACCGTTAATTTTAATGG

                  *     
       6870 TTGACCATTAAT
          1 TTGACCGTTAAT

       6882 ATAACGCCCT


Statistics
Matches: 29,  Mismatches: 3, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  20   29  1.00

ACGTcount: A:0.27, C:0.10, G:0.17, T:0.46


Consensus pattern (20 bp):   
TTGACCGTTAATTTTAATGG
Done.