Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g01729.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3917
ACGTcount: A:0.37, C:0.15, G:0.17, T:0.31


Found at i:1508 original size:37 final size:37

Alignment explanation


    Indices: 1467--1541  Score: 141
    Period size: 37  Copynumber: 2.0  Consensus size: 37

       1457 CACTGCACTG

                                                 
       1467 TGCTGTTGAACCAAATAGCATACTAGTGAGTTTACTA
          1 TGCTGTTGAACCAAATAGCATACTAGTGAGTTTACTA

                          *                      
       1504 TGCTGTTGAACCAAGTAGCATACTAGTGAGTTTACTA
          1 TGCTGTTGAACCAAATAGCATACTAGTGAGTTTACTA

             
       1541 T
          1 T

       1542 CCCTCACTGC


Statistics
Matches: 37,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  37   37  1.00

ACGTcount: A:0.31, C:0.16, G:0.20, T:0.33


Consensus pattern (37 bp):   
TGCTGTTGAACCAAATAGCATACTAGTGAGTTTACTA

Found at i:2126 original size:15 final size:15

Alignment explanation


    Indices: 2106--2137  Score: 55
    Period size: 15  Copynumber: 2.1  Consensus size: 15

       2096 TCGCACATTA

                       *   
       2106 TTATGTCTTTTGTAT
          1 TTATGTCTTTTATAT

                           
       2121 TTATGTCTTTTATAT
          1 TTATGTCTTTTATAT

              
       2136 TT
          1 TT

       2138 TACATGCATA


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  15   16  1.00

ACGTcount: A:0.16, C:0.06, G:0.09, T:0.69


Consensus pattern (15 bp):   
TTATGTCTTTTATAT
Done.