Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g01741.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 322

Length: 538
ACGTcount: A:0.25, C:0.20, G:0.22, T:0.33


Found at i:414 original size:84 final size:84

Alignment explanation


    Indices: 273--442  Score: 340
    Period size: 84  Copynumber: 2.0  Consensus size: 84

        263 TGAACTTAGA

                                                                             
        273 TTATAGATACGTCTCTGAAAGCTGTAACATTAATTGCTATGTAGCATCTGTTGCTGTGTACTGAT
          1 TTATAGATACGTCTCTGAAAGCTGTAACATTAATTGCTATGTAGCATCTGTTGCTGTGTACTGAT

                               
        338 GTAATTCACTGCTAGTCTT
         66 GTAATTCACTGCTAGTCTT

                                                                             
        357 TTATAGATACGTCTCTGAAAGCTGTAACATTAATTGCTATGTAGCATCTGTTGCTGTGTACTGAT
          1 TTATAGATACGTCTCTGAAAGCTGTAACATTAATTGCTATGTAGCATCTGTTGCTGTGTACTGAT

                               
        422 GTAATTCACTGCTAGTCTT
         66 GTAATTCACTGCTAGTCTT

              
        441 TT
          1 TT

        443 GAGCTGTTGT


Statistics
Matches: 86,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  84   86  1.00

ACGTcount: A:0.25, C:0.16, G:0.19, T:0.40


Consensus pattern (84 bp):   
TTATAGATACGTCTCTGAAAGCTGTAACATTAATTGCTATGTAGCATCTGTTGCTGTGTACTGAT
GTAATTCACTGCTAGTCTT
Done.