Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g01743.C1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2426
ACGTcount: A:0.30, C:0.17, G:0.22, T:0.32


Found at i:1372 original size:20 final size:20

Alignment explanation


    Indices: 1347--1386  Score: 80
    Period size: 20  Copynumber: 2.0  Consensus size: 20

       1337 CTAAATCTGG

                                
       1347 GAATTGGAGCAAGGAAGTGA
          1 GAATTGGAGCAAGGAAGTGA

                                
       1367 GAATTGGAGCAAGGAAGTGA
          1 GAATTGGAGCAAGGAAGTGA

       1387 AGTATGAAGA


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  20   20  1.00

ACGTcount: A:0.40, C:0.05, G:0.40, T:0.15


Consensus pattern (20 bp):   
GAATTGGAGCAAGGAAGTGA
Done.