Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g01756.F6

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4278
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.28


Found at i:3231 original size:69 final size:68

Alignment explanation


    Indices: 3136--3583  Score: 518
    Period size: 69  Copynumber: 6.5  Consensus size: 68

       3126 GGGAAAGGTC

                                        *        *    * *        *           
       3136 CATTGTTTGCAGATTCTGTTCCAAGCACCCCTGCCTACGCAGGTGACATGTTCCAGGGGAAGAGC
          1 CATT-TTTGCAGATTCTGTTCCAAGCACTCCTGCCTATGCAGATAACATGTTCAAGGGGAAGAGC

                
       3201 TCAT
         65 TCAT

                     **  *              *     *                  *        *  
       3205 CAGTTTTTGGGGAATCTGTTCCAAGCACCCCTGCTTATGCAGATAACATGTTCCAGGGGAAGGGC
          1 CA-TTTTTGCAGATTCTGTTCCAAGCACTCCTGCCTATGCAGATAACATGTTCAAGGGGAAGAGC

                
       3270 TCAT
         65 TCAT

              *                            *             *      *           *
       3274 CTCTTTTTGCAGATTCTGTTCCAAGCACTCCGGCCTATGCAGATAGCATGTTTAAGGGGAAGAGT
          1 C-ATTTTTGCAGATTCTGTTCCAAGCACTCCTGCCTATGCAGATAACATGTTCAAGGGGAAGAGC

              * 
       3339 TCGT
         65 TCAT

             *                                             *    *     **  * *
       3343 CCTTGTTTGCAGATTCTGTTCCAAGCACTCCTGCCTATGCAGATAACTTGTTTAAGGGTCAGGGT
          1 CATT-TTTGCAGATTCTGTTCCAAGCACTCCTGCCTATGCAGATAACATGTTCAAGGGGAAGAGC

                
       3408 TCAT
         65 TCAT

                *    *                                     *              * *
       3412 CCATATTTGGAGATTCTGTTCCAAGCACTCCTGCCTATGCAGATAACTTGTTCAAGGGGAAGGGT
          1 -CATTTTTGCAGATTCTGTTCCAAGCACTCCTGCCTATGCAGATAACATGTTCAAGGGGAAGAGC

              * 
       3477 TCGT
         65 TCAT

              * *            *                                               
       3481 CCGTATTTGCAGATTCTATTCCAAGCACTCCTGCCTATGCAGATAACATGTTCAAGGGGAAGAGC
          1 -CATTTTTGCAGATTCTGTTCCAAGCACTCCTGCCTATGCAGATAACATGTTCAAGGGGAAGAGC

                
       3546 TCAT
         65 TCAT

                                        *     
       3550 CTATTTTTGCAGATTCTGTTCCAAGCACCCCTGC
          1 C-ATTTTTGCAGATTCTGTTCCAAGCACTCCTGC

       3584 TTATCATTAT


Statistics
Matches: 328,  Mismatches: 46, Indels: 10
        0.85            0.12        0.03

Matches are distributed among these distances:
  68    4  0.01
  69  320  0.98
  70    4  0.01

ACGTcount: A:0.23, C:0.24, G:0.23, T:0.30


Consensus pattern (68 bp):   
CATTTTTGCAGATTCTGTTCCAAGCACTCCTGCCTATGCAGATAACATGTTCAAGGGGAAGAGCT
CAT

Found at i:3493 original size:207 final size:207

Alignment explanation


    Indices: 3133--3583  Score: 593
    Period size: 207  Copynumber: 2.2  Consensus size: 207

       3123 CCAGGGAAAG

                                                         * *        *        
       3133 GTCCATTGTTTGCAGATTCTGTTCCAAGCACCCCTGCCTACGCAGGTGACATGTTCCAGGGGAAG
          1 GTCC-TTGTTTGCAGATTCTGTTCCAAGCACCCCTGCCTACGCAGATAACATGTTCAAGGGGAAG

                       *     *                       *                  *    
       3198 AGCTCATCAGTTTTTGGGGAATCTGTTCCAAGCACCCCTGCTTATGCAGATAACATGTTCCAGGG
         65 AGCTCATCAGTATTTGGAGAATCTGTTCCAAGCACCCCTGCCTATGCAGATAACATGTTCAAGGG

                           *            *                           *      * 
       3263 GAAGGGCTCATCTCTTTTTGCAGATTCTGTTCCAAGCACTCCGGCCTATGCAGATAGCATGTTTA
        130 GAAGGGCTCATCTCTATTTGCAGATTCTATTCCAAGCACTCCGGCCTATGCAGATAACATGTTCA

                      *  
       3328 AGGGGAAGAGTTC
        195 AGGGGAAGAGCTC

                                          *        *         *    *     **  *
       3341 GTCCTTGTTTGCAGATTCTGTTCCAAGCACTCCTGCCTATGCAGATAACTTGTTTAAGGGTCAGG
          1 GTCCTTGTTTGCAGATTCTGTTCCAAGCACCCCTGCCTACGCAGATAACATGTTCAAGGGGAAGA

             *                  *              *                  *          
       3406 GTTCATCCA-TATTTGGAGATTCTGTTCCAAGCACTCCTGCCTATGCAGATAACTTGTTCAAGGG
         66 GCTCAT-CAGTATTTGGAGAATCTGTTCCAAGCACCCCTGCCTATGCAGATAACATGTTCAAGGG

                  *  *                                 *                     
       3470 GAAGGGTTCGTC-CGTATTTGCAGATTCTATTCCAAGCACTCCTGCCTATGCAGATAACATGTTC
        130 GAAGGGCTCATCTC-TATTTGCAGATTCTATTCCAAGCACTCCGGCCTATGCAGATAACATGTTC

                          
       3534 AAGGGGAAGAGCTC
        194 AAGGGGAAGAGCTC

            *      *                             
       3548 AT-CTATTTTTGCAGATTCTGTTCCAAGCACCCCTGC
          1 GTCCT-TGTTTGCAGATTCTGTTCCAAGCACCCCTGC

       3584 TTATCATTAT


Statistics
Matches: 211,  Mismatches: 29, Indels: 7
        0.85            0.12        0.03

Matches are distributed among these distances:
 206    3  0.01
 207  202  0.96
 208    6  0.03

ACGTcount: A:0.22, C:0.24, G:0.23, T:0.30


Consensus pattern (207 bp):   
GTCCTTGTTTGCAGATTCTGTTCCAAGCACCCCTGCCTACGCAGATAACATGTTCAAGGGGAAGA
GCTCATCAGTATTTGGAGAATCTGTTCCAAGCACCCCTGCCTATGCAGATAACATGTTCAAGGGG
AAGGGCTCATCTCTATTTGCAGATTCTATTCCAAGCACTCCGGCCTATGCAGATAACATGTTCAA
GGGGAAGAGCTC
Done.