Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g01768.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5340
ACGTcount: A:0.33, C:0.14, G:0.18, T:0.35


Found at i:2412 original size:50 final size:50

Alignment explanation


    Indices: 2354--2469  Score: 196
    Period size: 50  Copynumber: 2.3  Consensus size: 50

       2344 TAGGGTTATT

                                                  *           
       2354 TGTGATCCCATGTAAGACCATGTCTGGAACATGACATTGGCATCAATATA
          1 TGTGATCCCATGTAAGACCATGTCTGGAACATGACATTCGCATCAATATA

                                       *     *          *     
       2404 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTCGCATCGATATA
          1 TGTGATCCCATGTAAGACCATGTCTGGAACATGACATTCGCATCAATATA

                            
       2454 TGTGATCCCATGTAAG
          1 TGTGATCCCATGTAAG

       2470 TGCTGGAGCA


Statistics
Matches: 62,  Mismatches: 4, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  50   62  1.00

ACGTcount: A:0.28, C:0.21, G:0.22, T:0.28


Consensus pattern (50 bp):   
TGTGATCCCATGTAAGACCATGTCTGGAACATGACATTCGCATCAATATA
Done.