Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g01768.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 751

Length: 1253
ACGTcount: A:0.28, C:0.18, G:0.19, T:0.36


Found at i:59 original size:14 final size:14

Alignment explanation


    Indices: 15--60  Score: 56
    Period size: 14  Copynumber: 3.3  Consensus size: 14

          5 TAAAAATTGG

                  *    *  
         15 AATCCCAAAATTAA
          1 AATCCCCAAATCAA

              *           
         29 AAACCCCAAATCAA
          1 AATCCCCAAATCAA

                        * 
         43 AATCCCCAAATCGA
          1 AATCCCCAAATCAA

                
         57 AATC
          1 AATC

         61 TCAAAATCCC


Statistics
Matches: 27,  Mismatches: 5, Indels: 0
        0.84            0.16        0.00

Matches are distributed among these distances:
  14   27  1.00

ACGTcount: A:0.52, C:0.30, G:0.02, T:0.15


Consensus pattern (14 bp):   
AATCCCCAAATCAA

Found at i:67 original size:14 final size:14

Alignment explanation


    Indices: 15--68  Score: 54
    Period size: 14  Copynumber: 3.9  Consensus size: 14

          5 TAAAAATTGG

                       *  
         15 AATCCCAAAATTAA
          1 AATCCCAAAATCAA

              *   *       
         29 AAACCCCAAATCAA
          1 AATCCCAAAATCAA

                  *     * 
         43 AATCCCCAAATCGA
          1 AATCCCAAAATCAA

                *       
         57 AATCTCAAAATC
          1 AATCCCAAAATC

         69 CCTTTGATTT


Statistics
Matches: 33,  Mismatches: 7, Indels: 0
        0.82            0.17        0.00

Matches are distributed among these distances:
  14   33  1.00

ACGTcount: A:0.52, C:0.30, G:0.02, T:0.17


Consensus pattern (14 bp):   
AATCCCAAAATCAA
Done.