Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g00199.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3400
ACGTcount: A:0.30, C:0.17, G:0.22, T:0.30


Found at i:3195 original size:75 final size:75

Alignment explanation


    Indices: 3072--3214  Score: 259
    Period size: 75  Copynumber: 1.9  Consensus size: 75

       3062 GAGAGGAGGG

                                                    *                        
       3072 ATGGTGGAAAGATGTAGAATGGGAGGATGAATCCACTCGAGTTGCTTTTCTCCCTTCTTTCAAAC
          1 ATGGTGGAAAGATGTAGAATGGGAGGATGAATCCACTCGAATTGCTTTTCTCCCTTCTTTCAAAC

                      
       3137 CTGAGGTGGA
         66 CTGAGGTGGA

                                               *                *            
       3147 ATGGTGGAAAGATGTAGAATGGGAGGATGAATCCAGTCGAATTGCTTTTCTCTCTTCTTTCAAAC
          1 ATGGTGGAAAGATGTAGAATGGGAGGATGAATCCACTCGAATTGCTTTTCTCCCTTCTTTCAAAC

               
       3212 CTG
         66 CTG

       3215 GTCTATTCTA


Statistics
Matches: 65,  Mismatches: 3, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  75   65  1.00

ACGTcount: A:0.26, C:0.17, G:0.27, T:0.31


Consensus pattern (75 bp):   
ATGGTGGAAAGATGTAGAATGGGAGGATGAATCCACTCGAATTGCTTTTCTCCCTTCTTTCAAAC
CTGAGGTGGA
Done.