Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g01774.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2270
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.28


Found at i:108 original size:6 final size:6

Alignment explanation


    Indices: 94--124  Score: 53
    Period size: 6  Copynumber: 5.2  Consensus size: 6

         84 AAACGCACTT

                *                               
         94 CTCTTC CTCTCC CTCTCC CTCTCC CTCTCC C
          1 CTCTCC CTCTCC CTCTCC CTCTCC CTCTCC C

        125 CAATCCATCC


Statistics
Matches: 24,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
   6   24  1.00

ACGTcount: A:0.00, C:0.65, G:0.00, T:0.35


Consensus pattern (6 bp):   
CTCTCC

Done.