Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g01774.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2367
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28


Found at i:88 original size:12 final size:13

Alignment explanation


    Indices: 71--99  Score: 51
    Period size: 12  Copynumber: 2.3  Consensus size: 13

         61 GATATTTTTT

                         
         71 TAGCCATAGCC-A
          1 TAGCCATAGCCAA

                         
         83 TAGCCATAGCCAA
          1 TAGCCATAGCCAA

                
         96 TAGC
          1 TAGC

        100 ACAAGGGGCT


Statistics
Matches: 16,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  12   11  0.69
  13    5  0.31

ACGTcount: A:0.34, C:0.31, G:0.17, T:0.17


Consensus pattern (13 bp):   
TAGCCATAGCCAA

Found at i:205 original size:6 final size:6

Alignment explanation


    Indices: 191--221  Score: 53
    Period size: 6  Copynumber: 5.2  Consensus size: 6

        181 AAACGCACTT

                *                               
        191 CTCTTC CTCTCC CTCTCC CTCTCC CTCTCC C
          1 CTCTCC CTCTCC CTCTCC CTCTCC CTCTCC C

        222 CAATCCATCC


Statistics
Matches: 24,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
   6   24  1.00

ACGTcount: A:0.00, C:0.65, G:0.00, T:0.35


Consensus pattern (6 bp):   
CTCTCC

Done.